(py-3.8.3) [tang@grendel-s-s96n41:lammps]$ tar -xf stable_29Sep2021_update3.tar.gz (py-3.8.3) [tang@grendel-s-s96n41:build-intel-2018-2]$ cd lammps-stable_29Sep2021_update3 (py-3.8.3) [tang@grendel-s-s96n41:lammps-stable_29Sep2021_update3]$ mkdir build-intel-2018-2 (py-3.8.3) [tang@grendel-s-s96n41:lammps-stable_29Sep2021_update3]$ cd build-intel-2018-2 (py-3.8.3) [tang@grendel-s-s96n41:build-intel-2018-2]$ module load cmake/3.19.0 (py-3.8.3) [tang@grendel-s-s96n41:build-intel-2018-2]$ module load intel/2018.2.199 (py-3.8.3) [tang@grendel-s-s96n41:build-intel-2018-2]$ module load mpich/3.2 (py-3.8.3) [tang@grendel-s-s96n41:build-intel-2018-2]$ module load fftw/3.3.8 (py-3.8.3) [tang@grendel-s-s96n41:build-intel-2018-2]$ cmake ../cmake -DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_Fortran_COMPILER=mpifort -D PKG_MOLECULE=on -D PKG_KSPACE=on -- The CXX compiler identification is Intel 18.0.2.20180210 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /comm/swstack/core/intel-2018.2.199/mpich/3.2/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Git: /usr/bin/git (found version "1.8.3.1") -- Appending /comm/swstack/core/intel-2018.2.199/mpich-3.2/fftw/3.3.8/lib:/comm/swstack/core/intel-2018.2.199/mpich/3.2/lib:/comm/swstack/core/gcc/6.3.0/lib64:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/daal/../tbb/lib/intel64_lin/gcc4.4:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/daal/lib/intel64_lin:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64_lin:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64:/comm/swstack/tools/ffmpeg/3.4.1/lib to CMAKE_LIBRARY_PATH: /comm/swstack/core/intel-2018.2.199/mpich-3.2/fftw/3.3.8/lib:/comm/swstack/core/intel-2018.2.199/mpich/3.2/lib:/comm/swstack/core/gcc/6.3.0/lib64:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/daal/../tbb/lib/intel64_lin/gcc4.4:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/daal/lib/intel64_lin:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64_lin:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64:/comm/swstack/core/intel/2018.2.199/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64:/comm/swstack/tools/ffmpeg/3.4.1/lib -- Running check for auto-generated files from make-based build system -- Found MPI_CXX: /comm/swstack/core/intel-2018.2.199/mpich/3.2/bin/mpicxx (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Looking for C++ include omp.h -- Looking for C++ include omp.h - found -- Found OpenMP_CXX: -qopenmp (found version "5.0") -- Found OpenMP: TRUE (found version "5.0") -- Found PNG: /usr/lib64/libpng.so (found version "1.5.13") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") -- Found GZIP: /usr/bin/gzip -- Found FFMPEG: /comm/swstack/tools/ffmpeg/3.4.1/bin/ffmpeg -- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Found FFTW3: /comm/swstack/core/intel-2018.2.199/mpich-3.2/fftw/3.3.8/lib/libfftw3.so -- Looking for C++ include cmath -- Looking for C++ include cmath - found -- Generating style headers... -- Generating package headers... -- Generating lmpinstalledpkgs.h... -- Could NOT find ClangFormat (missing: ClangFormat_EXECUTABLE) (Required is at least version "8.0") -- The following tools and libraries have been found and configured: * Git * MPI * OpenMP * PNG * ZLIB * PkgConfig * FFTW3 -- <<< Build configuration >>> Operating System: Linux CentOS Linux 7 Build type: RelWithDebInfo Install path: /home/tang/.local Generator: Unix Makefiles using /usr/bin/gmake -- Enabled packages: KSPACE;MOLECULE -- <<< Compilers and Flags: >>> -- C++ Compiler: /comm/swstack/core/intel-2018.2.199/mpich/3.2/bin/mpicxx Type: Intel Version: 18.0.2.20180210 C++ Flags: -restrict -O2 -g -DNDEBUG Defines: LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;LAMMPS_OMP_COMPAT=3;LAMMPS_PNG;LAMMPS_GZIP;LAMMPS_FFMPEG;FFT_FFTW3;FFT_FFTW_THREADS Options: -xHost -- <<< Linker flags: >>> -- Executable name: lmp -- Static library flags: -- <<< MPI flags >>> -- MPI_defines: MPICH_SKIP_MPICXX;OMPI_SKIP_MPICXX;_MPICC_H -- MPI includes: -- MPI libraries: ; -- <<< FFT settings >>> -- Primary FFT lib: FFTW3 -- Using double precision FFTs -- Using threaded FFTs -- Configuring done -- Generating done -- Build files have been written to: /home/tang/opt/lammps/lammps-stable_29Sep2021_update3/build-intel-2018-2 (py-3.8.3) [tang@grendel-s-s96n41:build-intel-2018-2]$ make -j 8